Transcript datasets/March 2008

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Contents

[edit] Source

All data sets were derived from the EMBL release 94. Sequence files are available as the raw submitted sequence and as a clipped file (with poly A|T tracts removed).

[edit] Release statistics

Species Taxon ID No. sequences Total length (bp)
Aedes aegypti 7159 303,457 182,241,358
Anopheles gambiae 7165 216,665 133,887,415
Culex pipiens quinquefasciatus 7176 75,848 32,359,233
Ixodes scapularis 6945 194,435 140,575,243
Pediculus humanus 121224 1,137 695,554


Species Taxon ID No. sequences Total length (bp)
Aedes albopictus 7160 187 166,621
Aedes spp. n/a 1 627
Amblyomma americanum 6943 6,492 2,910,606
Amblyomma variegatum 34610 3,995 2,321,258
Anopheles albimanus 7167 4,469 2,269,065
Anopheles anthropophagus 74872 325 127,056
Anopheles aquasalis 42839 134 51,286
Anopheles darlingi 43151 694 355,822
Anopheles funestus 62324 2,937 1,259,671
Anopheles spp. n/a 67 52,449
Anopheles stephensi 30069 123 109,240
Boophilus microphilus 6941 44,243 31,097,384
Culex spp. n/a 270 167,229
Dermacentor andersoni 34620 1,393 763,880
Dermacentor variabilis 34621 2,130 971,563
Glossina morsitans morsitans 37546 41,854 26,317,566
Ixodes pacificus 29930 120 49,148
Ixodes ricinus 34613 2,071 1,009,061
Ixodes spp. n/a 1 222
Lutzomyia longipalpis 7200 30,718 30,984,954
Phlebotomus papatasi 29031 23,0714 13,696,396
Rhipicephalus appendiculatus 34631 19,155 14,025,737
Rhodnius prolixus 13249 10,255 4,850,669

[edit] Major Changes

[edit] Increases

  • Rhodnius prolixus 5.8 K novel EST sequences
  • Dermacentor variabilis 2.0 K novel EST sequences

[edit] New species

New species have been added for which more than 100 sequences are present in the public nucleotide databanks.

  • None

[edit] Minor species

When a species has less than 100 sequences in the public nucleotide databanks the sequences have been collated into the following groups:

  • Aedes spp.
  • Anopheles spp.
  • Culex spp.
  • Ixodes spp.
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