Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 11 of 11
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File Organism Size Type Description
Stomoxys-calcitrans-USDA_CONTIGS_ScalU1.fa.gz Stomoxys calcitrans 237.83 MB Contigs USDA strain genome contig sequences, ScalU1 assembly.
Stomoxys-calcitrans-USDA_SCAFFOLDS_ScalU1.fa.gz Stomoxys calcitrans 254.86 MB Scaffolds USDA strain genomic scaffolds sequences, ScalU1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Stomoxys-calcitrans-USDA_PEPTIDES_ScalU1.5.fa.gz Stomoxys calcitrans 5.63 MB Peptides USDA strain peptide sequences, ScalU1.5 geneset.
Stomoxys-calcitrans-USDA_TRANSCRIPTS_ScalU1.5.fa.gz Stomoxys calcitrans 14.06 MB Transcripts USDA strain transcript sequences, ScalU1.5 geneset.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.5.gff3.gz Stomoxys calcitrans 4.53 MB Basefeatures USDA strain ScalU1.5 geneset in GFF3 format.
Stomoxys-calcitrans-USDA_BASEFEATURES_ScalU1.5.gtf.gz Stomoxys calcitrans 3.16 MB Basefeatures USDA strain ScalU1.5 geneset in GTF (v2.2) format.
Stomoxys-calcitrans-8C7A2A5H3J4_TSA_GDIM01.fa.gz Stomoxys calcitrans 10.32 MB Assembled transcriptome TSA:GDIM00000000.1 pooled male and female whole animals
Stomoxys-calcitrans-USDA_CONTIG2SCAFFOLD_ScalU1.agp.gz Stomoxys calcitrans 3.03 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Stomoxys calcitrans USDA strain, ScalU1.1 assembly.
Stomoxys-calcitrans-USDA_MAPPINGS_ScalU1.1-ScalU1.2.txt Stomoxys calcitrans 12.57 KB ID Mapping Stable ID mapping between genesets ScalU1.1 and ScalU1.2 (RNA gene update)
Stomoxys-calcitrans-USDA_REPEATS.lib Stomoxys calcitrans 417.15 KB RepeatMasker library RepeatMasker library file of repeats for Stomoxys calcitrans, USDA strain.
Stomoxys-calcitrans-USDA_REPEATFEATURES_ScalU1.gff3.gz Stomoxys calcitrans 49.32 MB Repeat features USDA strain ScalU1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.